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How to get fromFlagstaff to San Clementeby plane, train, train (Amtrak), bus (Greyhound, Amtrak), car, or shuttle

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There are 7 ways to get from Flagstaff to San Clemente by plane, train, train (Amtrak), bus (Greyhound, Amtrak), car, or shuttle

Select an option below to see step-by-step directions and to compare ticket prices and travel times in Rome2Rio's travel planner.

  1. Fly Flagstaff to John Wayne Airport Orange County, train

    best
    1. Fly from Flagstaff (FLG) to John Wayne Airport Orange County (SNA)plane plane FLG - SNA
    2. Take the train from Santa Ana to San Clemente Pier Amtraktrain train
    6h 58m
    $92–420

  2. Drive  475.8 mi

    cheapest
    1. Drive from Flagstaff to San Clementecar car 475.8 mi
    7h 52m
    $82–118

  3. Train

    1. Take the train from Flagstaff to Riversidetrain train Southwest Chief
    2. Take the train from Riverside - Downtown to San Clemente Piertrain train IE-OC Line
    12h 46m
    $279–428

  4. Bus

    1. Take the bus from Flagstaff Bus Station to Los Angeles Union Stationbus bus Greyhound US1210 / ...
    2. Take the bus from Los Angeles to San Juan Capistrano Amtrak Stationbus bus Amtrak Thruway Connecting Service
    15h 52m

  5. Fly Flagstaff to Mcclellan–Palomar Airport

    1. Fly from Flagstaff (FLG) to Mcclellan–Palomar Airport (CLD)plane plane FLG - CLD
    8h
    $89–399

  6. Shuttle to Phoenix, fly to San Diego International Airport, train

    1. Take a shuttle bus from Flagstaff Amtrak to Sky Harbor International Airportshuttle bus
    2. Fly from Phoenix (PHX) to San Diego International Airport (SAN)plane plane PHX - SAN
    3. Take the train from San Diego to San Clemente Pier Amtraktrain train
    7h 33m
    $284–412

  7. Shuttle to Phoenix, fly to John Wayne Airport Orange County, train

    1. Take a shuttle bus from Flagstaff Amtrak to Sky Harbor International Airportshuttle bus
    2. Fly from Phoenix (PHX) to John Wayne Airport Orange County (SNA)plane plane PHX - SNA
    3. Take the train from Santa Ana to San Clemente Pier Amtraktrain train
    7h 37m
    $241–675

Flagstaff to San Clemente by train

Calendar4Weekly Trains
Duration12h 46mAverage Duration
Ticket$279Cheapest Price
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Comparing Your Travel Options

Map of how to get from Flagstaff to San Clemente.ExpandLaunch map view
  • Distance: 410 mi
  • Duration: 6h 58m

What companies run services between Flagstaff, AZ, USA and San Clemente, CA, USA?

You can take a train from Flagstaff to San Clemente Pier via Riverside - Downtown in around 12h 46m. Alternatively, you can take a bus from Flagstaff Bus Station to Calle De Los Molinos-Avd Pico via Los Angeles Union Station, Los Angeles, San Juan Capistrano Amtrak Station, and Camino Capistrano-Old Mission in around 15h 52m.

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